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What size tank? I have a pair in a 30 gl. and still have the last batch plus the new batch she brought out about a week ago, like yours, mine are in there own breeding tank.
Once the eggs are laid and fertilized try removing the male to another tank and see if she still eats them or tries to raise them.
The only apisto's I've ever had that did that was a pair of Borellii and she only let him do it once, after that she was hell on wheels.
I got a couple of the males [fire red and double red], the double was pretty bad when I got him and nursed him back to health only to have him jump out of the tank while I was doing a cleaning, so now down to a fire red and female whatever type. On the good side I have two Borellii pairs...